Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs4851197 chr2:99892878 A/G 1.18E-6 512 7 20.48 22.27 KM Plot
HNSC rs4851198 chr2:99910972 G/T 9.2E-7 513 7 20.77 22.27 KM Plot
HNSC rs4851199 chr2:99911110 A/G 9.2E-7 513 7 20.77 22.27 KM Plot
HNSC rs4863649 chr4:140261465 T/C 3.59E-5 513 20.83 26.63 18.2 KM Plot
HNSC rs492296 chr1:153109395 A/C 3.74E-6 511 22.87 18.28 14.13 KM Plot
HNSC rs495385 chr6:74352365 A/G 1.27E-6 515 21.5 24.4 10.88 KM Plot
HNSC rs495757 chr1:153109630 T/C 3.74E-6 511 22.87 18.28 14.13 KM Plot
HNSC rs55656632 chr1:114414766 AGAGT/A 2.98E-5 509 34.57 25.15 18.27 KM Plot
HNSC rs55762724 chr1:36382702 C/T 2.42E-11 510 21.33 29.17 3.73 KM Plot
HNSC rs56075219 chr6:155557172 A/G 4.65E-5 500 15.63 25.3 24.23 KM Plot
HNSC rs564211 chr1:153114077 G/T 1.58E-6 511 23.1 18.07 14.13 KM Plot
HNSC rs57342224 chr12:122362024 G/T 4.93E-5 506 21.65 24.23 14.13 KM Plot
HNSC rs5762803 chr22:29193638 G/C 3.33E-16 514 21.37 25.53 1.87 KM Plot
HNSC rs57798503 chr1:35939272 G/T 9.32E-6 509 21.47 26.37 3.37 KM Plot
HNSC rs584873 chr1:36431806 C/A 2.24E-11 511 21.37 29.17 3.73 KM Plot